PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486883
Common NameARALYDRAFT_486883
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 225aa    MW: 25032 Da    PI: 8.8444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486883genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001678100123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              + C+ C+k Fs++  L  H++ H
   486883  78 FACTFCKKEFSTSQALGGHQNAH 100
              78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-575104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.48E-675105No hitNo description
PfamPF139125.7E-677102IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.65578105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MELNLSTPTS CSSSSISSSS HEVIPRTKGK LKEKVTAEPS KETPRLEFRF LFNESTRSHP  60
GFLDEAEGTR NEAKARVFAC TFCKKEFSTS QALGGHQNAH KQERSLAKRR KEIELNYPGL  120
SFYSQYPPSG VSYSSSSSQY DLGVRYNPNI AKTKPYPFNI FTCRLGYRGL NIPLLSHLSV  180
PKTDDLSKNL ISNLEGSIQD QAEKKDQPDT DPSKDSDIDL SLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1623510.0AL162351.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872989.11e-165zinc finger family protein
TrEMBLD7M6E61e-165D7M6E6_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.6__17__AT5G01860.11e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-102C2H2 family protein